Spring 2021
ECE 564 Modern Light Microscopy
Text: “Introduction to Optical Microscopy” by J. Mertz (Roberts and Company, 2010)
“Quantitative phase imaging of cells and tissues” by G. Popescu (McGraw-Hill, 2011)
Schedule: 11:00-12:20 T-R;
Office Hours: Thursday 12:30-2:00
Teaching Assistant: Neha Goswami (email)
TA Office Hours: Friday 3:00-4:00pm
# |
Day |
Date |
Topic |
Supporting Material |
Homework |
Links |
References |
28 |
T |
Jan 26 |
Introduction |
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27 |
R |
Jan 28 |
Groundwork: 2D, 3D Fourier transforms |
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26 |
T |
Feb 02 |
Groundwork: 2D, 3D Fourier transforms |
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25 |
R |
Feb 04 |
Fourier Optics |
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Popescu [5] |
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24 |
T |
Feb 09 |
Fourier Optics |
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23 |
R |
Feb 11 |
Light Microscopy |
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22 |
T |
Feb 16 |
Holography |
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21 |
R |
Feb 18 |
Quantitative phase imaging (QPI) |
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20 |
T |
Feb 23 |
Quantitative phase imaging (QPI) |
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19 |
R |
Feb 25 |
Propagation in inhomogeneous media |
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18 |
T |
Mar 02 |
Propagation in inhomogeneous media |
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17 |
R |
Mar 04 |
Dynamic light scattering |
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Berne & Pecora [9] |
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16 |
T |
Mar 09 |
Dynamic light scattering |
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15 |
R |
Mar 11 |
Propagation of Gaussian beams |
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Yariv- Optical waves in crystals [10] |
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14 |
T |
Mar 16 |
Propagation of Gaussian beams |
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13 |
R |
Mar 18 |
Confocal microscopy |
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12 |
T |
Mar 23 |
Review |
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R |
Mar 25 |
Midterm |
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11 |
T |
Mar 30 |
Optical coherence tomography |
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10 |
R |
Apr 01 |
Optical coherence tomography |
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9 |
T |
Apr 06 |
Propagation in nonlinear media |
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8 |
R |
Apr 08 |
Propagation in nonlinear media |
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T |
Apr 13 |
Day off |
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7 |
R |
Apr 15 |
Nonlinear microscopy |
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Masters and So [14] | ||
6 |
T |
Apr 20 |
Nonlinear microscopy |
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5 |
R |
Apr 22 |
Superresolution microscopy |
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T |
Apr 27 |
Student TALKS |
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R |
Apr 29 |
Student TALKS |
Peer evaluation form |
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2 |
T |
May 04 |
Student TALKS |
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R |
May 06 |
Reading Day |
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1 |
M |
May 10 |
Student TALKS |
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M |
May 10 |
Reports due by midnight May 10. Upload to your Box folder |
Report Template. |
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Grading formula: Midterm 30%; Final report - 20%; Homework - 30%; Presentation 20%; Class participation - 5% .
REFERENCES
1. A. Papoulis The Fourier integral and its applications (McGraw-Hill, New York,, 1962).
2. R. N. Bracewell The Fourier transform and its applications (McGraw Hill, Boston, 2000).
3. J. W. Goodman Introduction to Fourier optics (McGraw-Hill, New York, 1996).
5. G. Popescu Quantitative phase imaging of cells and tissues (McGraw-Hill, New York, 2011).
7. H. C. van de Hulst Light Scattering by Small Particles (Dover Publications New York, 1981).
10. Yariv, Amnon, and Pochi Yeh. Optical waves in crystals. (Vol. 5. New York: Wiley, 1984.)
12. R. W. Boyd Nonlinear optics (Academic Press, Amsterdam ; Boston, 2008).
13. Y. R. Shen The principles of nonlinear optics (J. Wiley, New York, 1984).